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BDBM4824

E3L000033
Internal ID: BDB000033
Activity data available Local docking-ready structure
Dock with O95365
Structure
/e3_file/ligand_db/generated/BDB000033/BDB000033.sdf
Basic Properties
Compound ID
E3L000033
Internal ID
BDB000033
Molecular formula
C26H25N5O5
Molecular weight
487.516000
Exact mass
487.185569
XLogP
2.8410
TPSA
122.6300
HBA / HBD
7 / 2
Rotatable bonds
4
Heavy atoms / rings
36 / 6
Activity summary
EC50 > 100.00000000 nM
1 activity record(s) imported
InChIKey
GHDKYCBBVDZHOT-UHFFFAOYSA-N
SMILES
Cc1c(Nc2cccc3c2C(=O)N(C2CCC(=O)NC2=O)C3=O)ccc2c1cnn2C1CCOCC1
Aliases
BDBM4824 (preferred) 2-(2,6-dioxopiperidin-3-yl)-4-((4-methyl-1-(tetrahydro-2H-pyran-4-yl)-1H-indazol-5-yl)amino)isoindoline-1,3-dione (source_name) BDBM4824 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O95365 ZBTB7A;FBI1;LRF;ZBTB7;ZNF857A
Zinc finger and BTB domain-containing protein 7A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM4824 medium
; target=Zinc finger and BTB domain-containing protein 7A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM4824 Open - 10.7270/Q24X5DJ6
PubChem CID171554221 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c(Nc2cccc3c2C(=O)N(C2CCC(=O)NC2=O)C3=O)ccc2c1cnn2C1CCOCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB000033/BDB000033.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB000033/BDB000033.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB000033/BDB000033.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB000033/BDB000033.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB000033/BDB000033.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Zinc finger and BTB domain-containing protein 7A
O95365
E3 ligase component 		BindingDB:BDBM4824 EC50 >100 nM Uncertain DOI: 10.7270/Q24X5DJ6 1