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Sorafenib

E3L000233

Internal ID: BDB000233

Activity data available Local docking-ready structure

Dock with O14965 Dock with O43172 Dock with O95835 Dock with P51617 Dock with Q13233 Dock with Q92630

Structure

/e3_file/ligand_db/generated/BDB000233/BDB000233.sdf

Basic Properties

Compound ID

E3L000233

Internal ID

BDB000233

Molecular formula

C21H16ClF3N4O3

Molecular weight

464.831000

Exact mass

464.086303

XLogP

5.5497

TPSA

92.3500

HBA / HBD

4 / 3

Rotatable bonds

Heavy atoms / rings

32 / 3

Activity summary

IC50 unknown 3800.00000000 nM
17 activity record(s) imported

InChIKey

MLDQJTXFUGDVEO-UHFFFAOYSA-N

SMILES

CNC(=O)c1cc(Oc2ccc(NC(=O)Nc3ccc(Cl)c(C(F)(F)F)c3)cc2)ccn1

Aliases

BDBM16673 (preferred) Sorafenib (source_name) BDBM16673 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
O14965	AURKA;AIK;AIRK1;ARK1;AURA;AYK1;BTAK;IAK1;STK15;STK6 Aurora kinase A	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM16673	medium ; target=Aurora kinase A
O43172	PRPF4;PRP4 U4/U6 small nuclear ribonucleoprotein Prp4	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM16673	medium ; target=U4/U6 small nuclear ribonucleoprotein Prp4
O95835	LATS1;WARTS Serine/threonine-protein kinase LATS1	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM16673	medium ; target=Serine/threonine-protein kinase LATS1
P51617	IRAK1;IRAK Interleukin-1 receptor-associated kinase 1	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM16673	medium ; target=Interleukin-1 receptor-associated kinase 1
Q13233	MAP3K1;MAPKKK1;MEKK;MEKK1 Mitogen-activated protein kinase kinase kinase 1	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM16673	medium ; target=Mitogen-activated protein kinase kinase kinase 1
Q92630	DYRK2 Dual specificity tyrosine-phosphorylation-regulated kinase 2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM16673	medium ; target=Dual specificity tyrosine-phosphorylation-regulated kinase 2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM16673	Open	-	10.1016/j.ejmech.2015.05.008; 10.1016/j.bmc.2011.06.016; 10.1016/j.bmcl.2012.05.116; 10.1016/j.bmc.2013.03.083; 10.1182/blood-2009-05-222034; 10.1038/nbt.1990; 10.1038/nbt1358 PMID: 26081023; 21708468; 22726931; 23618709; 19654408; 22037378; 18183025
PubChem	CID216239	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	CNC(=O)c1cc(Oc2ccc(NC(=O)Nc3ccc(Cl)c(C(F)(F)F)c3)cc2)ccn1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB000233/BDB000233.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB000233/BDB000233.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB000233/BDB000233.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB000233/BDB000233.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB000233/BDB000233.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Aurora kinase A O14965 E3 ligase component	BindingDB:BDBM16673	IC50	3800 nM	Low	DOI: 10.1016/j.ejmech.2015.05.008 PMID: 26081023	1
Aurora kinase A O14965 E3 ligase component	BindingDB:BDBM16673	IC50	3800 nM	Low	DOI: 10.1016/j.bmcl.2012.05.116 PMID: 22726931	1
Aurora kinase A O14965 E3 ligase component	BindingDB:BDBM16673	IC50	3800 nM	Low	DOI: 10.1016/j.bmc.2011.06.016 PMID: 21708468	1
Aurora kinase A O14965 E3 ligase component	BindingDB:BDBM16673	IC50	3800 nM	Low	DOI: 10.1016/j.bmc.2013.03.083 PMID: 23618709	1
Aurora kinase A O14965 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1038/nbt1358 PMID: 18183025	1
Aurora kinase A O14965 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1182/blood-2009-05-222034 PMID: 19654408	1
Aurora kinase A O14965 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1038/nbt.1990 PMID: 22037378	1
Dual specificity tyrosine-phosphorylation-regulated kinase 2 Q92630 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1038/nbt.1990 PMID: 22037378	1
Dual specificity tyrosine-phosphorylation-regulated kinase 2 Q92630 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1182/blood-2009-05-222034 PMID: 19654408	1
Interleukin-1 receptor-associated kinase 1 P51617 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1182/blood-2009-05-222034 PMID: 19654408	1
Interleukin-1 receptor-associated kinase 1 P51617 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1038/nbt.1990 PMID: 22037378	1
Mitogen-activated protein kinase kinase kinase 1 Q13233 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1182/blood-2009-05-222034 PMID: 19654408	1
Mitogen-activated protein kinase kinase kinase 1 Q13233 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1038/nbt.1990 PMID: 22037378	1
Serine/threonine-protein kinase LATS1 O95835 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1182/blood-2009-05-222034 PMID: 19654408	1
Serine/threonine-protein kinase LATS1 O95835 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1038/nbt.1990 PMID: 22037378	1
Serine/threonine-protein kinase LATS1 O95835 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1038/nbt1358 PMID: 18183025	1
U4/U6 small nuclear ribonucleoprotein Prp4 O43172 E3 ligase component	BindingDB:BDBM16673	Kd	>10000 nM	Low	DOI: 10.1182/blood-2009-05-222034 PMID: 19654408	1