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Arachidonic Acid

E3L000529
Internal ID: BDB000529
Activity data available Local docking-ready structure
Dock with P37231 Dock with Q07869
Structure
/e3_file/ligand_db/generated/BDB000529/BDB000529.sdf
Basic Properties
Compound ID
E3L000529
Internal ID
BDB000529
Molecular formula
C20H32O2
Molecular weight
304.474000
Exact mass
304.240230
XLogP
6.2167
TPSA
37.3000
HBA / HBD
1 / 1
Rotatable bonds
14
Heavy atoms / rings
22 / 0
Activity summary
IC50 unknown 1200.00000000 nM
3 activity record(s) imported
InChIKey
YZXBAPSDXZZRGB-DOFZRALJSA-N
SMILES
CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O
Aliases
BDBM22319 (preferred) Arachidonic Acid (source_name) BDBM22319 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P37231 PPARG;NR1C3
Peroxisome proliferator-activated receptor gamma		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM22319 medium
; target=Peroxisome proliferator-activated receptor gamma
Q07869 PPARA;NR1C1;PPAR
Peroxisome proliferator-activated receptor alpha		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM22319 medium
; target=Peroxisome proliferator-activated receptor alpha
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM22319 Open - 10.1007/s00044-012-0285-6; 10.1007/s00044-008-9102-7
PubChem CID444899 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB000529/BDB000529.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB000529/BDB000529.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB000529/BDB000529.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB000529/BDB000529.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB000529/BDB000529.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Peroxisome proliferator-activated receptor alpha
Q07869
E3 ligase component 		BindingDB:BDBM22319 IC50 1200 nM Low DOI: 10.1007/s00044-012-0285-6 1
Peroxisome proliferator-activated receptor alpha
Q07869
E3 ligase component 		BindingDB:BDBM22319 IC50 1200 nM Low DOI: 10.1007/s00044-008-9102-7 1
Peroxisome proliferator-activated receptor gamma
P37231
E3 ligase component 		BindingDB:BDBM22319 IC50 1600 nM Low DOI: 10.1007/s00044-012-0285-6 1