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4-Nitrobenzil

E3L000556
Internal ID: BDB000556
Activity data available Local docking-ready structure
Dock with P00748
Structure
/e3_file/ligand_db/generated/BDB000556/BDB000556.sdf
Basic Properties
Compound ID
E3L000556
Internal ID
BDB000556
Molecular formula
C14H9NO4
Molecular weight
255.229000
Exact mass
255.053158
XLogP
2.6604
TPSA
77.2800
HBA / HBD
4 / 0
Rotatable bonds
4
Heavy atoms / rings
19 / 2
Activity summary
Ki unknown 31.00000000 nM
1 activity record(s) imported
InChIKey
GPDKREBNFFEDHW-UHFFFAOYSA-N
SMILES
O=C(C(=O)c1ccc([N+](=O)[O-])cc1)c1ccccc1
Aliases
BDBM22749 (preferred) 4-Nitrobenzil (source_name) BDBM22749 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P00748 F12
Coagulation factor XII		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM22749 medium
; target=Coagulation factor XII
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM22749 Open - 10.1021/jm049011j PMID: 15828829
PubChem CID283893 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(C(=O)c1ccc([N+](=O)[O-])cc1)c1ccccc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB000556/BDB000556.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB000556/BDB000556.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB000556/BDB000556.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB000556/BDB000556.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB000556/BDB000556.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Coagulation factor XII
P00748
E3 ligase component 		BindingDB:BDBM22749 Ki 31 nM High DOI: 10.1021/jm049011j
PMID: 15828829 		1