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BDBM26213

E3L000852
Internal ID: BDB000852
Activity data available Local docking-ready structure
Dock with P98170
Structure
/e3_file/ligand_db/generated/BDB000852/BDB000852.sdf
Basic Properties
Compound ID
E3L000852
Internal ID
BDB000852
Molecular formula
C27H33N3O4
Molecular weight
463.578000
Exact mass
463.247107
XLogP
2.6914
TPSA
98.7400
HBA / HBD
4 / 3
Rotatable bonds
7
Heavy atoms / rings
34 / 4
Activity summary
Ki unknown 29000.00000000 nM
1 activity record(s) imported
InChIKey
HVADKVMBUUALGR-MLCQCVOFSA-N
SMILES
CC[C@H](O)C(=O)N[C@H]1CCC[C@H]2CC[C@@H](C(=O)NC(c3ccccc3)c3ccccc3)N2C1=O
Aliases
BDBM26213 (preferred) (3S,6S,9aS)-N-(diphenylmethyl)-6-[(2S)-2-hydroxybutanamido]-5-oxo-octahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide (source_name) BDBM26213 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P98170 XIAP;API3;BIRC4;IAP3
E3 ubiquitin-protein ligase XIAP		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM26213 medium
; target=E3 ubiquitin-protein ligase XIAP
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM26213 Open - 10.1021/jm8006849 PMID: 18954041
PubChem CID25138060 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC[C@H](O)C(=O)N[C@H]1CCC[C@H]2CC[C@@H](C(=O)NC(c3ccccc3)c3ccccc3)N2C1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB000852/BDB000852.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB000852/BDB000852.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB000852/BDB000852.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB000852/BDB000852.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB000852/BDB000852.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase XIAP
P98170
E3 ligase component 		BindingDB:BDBM26213 Ki 29000 nM Low DOI: 10.1021/jm8006849
PMID: 18954041 		1