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BDBM27119

E3L000953
Internal ID: BDB000953
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB000953/BDB000953.sdf
Basic Properties
Compound ID
E3L000953
Internal ID
BDB000953
Molecular formula
C16H22N4O
Molecular weight
286.379000
Exact mass
286.179361
XLogP
2.2512
TPSA
75.0100
HBA / HBD
3 / 2
Rotatable bonds
4
Heavy atoms / rings
21 / 3
Activity summary
Ki unknown 8.00000000 nM
3 activity record(s) imported
InChIKey
KXSIHXHEHABEJX-UHFFFAOYSA-N
SMILES
CCCN1CCC(c2nc3cccc(C(N)=O)c3[nH]2)CC1
Aliases
BDBM27119 (preferred) 2-(1-propylpiperidin-4-yl)-1H-benzimidazole-4-carboxamide (source_name) BDBM27119 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM27119 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM27119 Open - 10.1016/j.bmc.2008.05.044; 10.1021/jm900697r; 10.7270/Q2JS9VNS PMID: 18541433; 19888760; 32717529
PubChem CID9925908 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCN1CCC(c2nc3cccc(C(N)=O)c3[nH]2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB000953/BDB000953.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB000953/BDB000953.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB000953/BDB000953.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB000953/BDB000953.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB000953/BDB000953.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM27119 Ki 8 nM Very high DOI: 10.1016/j.bmc.2008.05.044
PMID: 18541433 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM27119 Ki 8 nM Very high DOI: 10.1021/jm900697r
PMID: 19888760 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM27119 Ki 8 nM Very high DOI: 10.7270/Q2JS9VNS
PMID: 32717529 		1