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BDBM27136

E3L000970
Internal ID: BDB000970
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB000970/BDB000970.sdf
Basic Properties
Compound ID
E3L000970
Internal ID
BDB000970
Molecular formula
C13H16N4O
Molecular weight
244.298000
Exact mass
244.132411
XLogP
1.2604
TPSA
83.8000
HBA / HBD
3 / 3
Rotatable bonds
2
Heavy atoms / rings
18 / 3
Activity summary
Ki unknown 5.00000000 nM
1 activity record(s) imported
InChIKey
JNAHVYVRKWKWKQ-ZDUSSCGKSA-N
SMILES
C[C@@]1(c2nc3cccc(C(N)=O)c3[nH]2)CCCN1
Aliases
BDBM27136 (preferred) 2-[(2s)-2-Methylpyrrolidin-2-Yl]-1h-Benzimidazole-7-Carboxamide (source_name) BDBM27136 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM27136 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM27136 Open - 10.1021/jm801171j PMID: 19143569
PubChem CID11842604 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@]1(c2nc3cccc(C(N)=O)c3[nH]2)CCCN1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB000970/BDB000970.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB000970/BDB000970.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB000970/BDB000970.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB000970/BDB000970.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB000970/BDB000970.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM27136 Ki 5 nM Very high DOI: 10.1021/jm801171j
PMID: 19143569 		1