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BDBM27163

E3L000997
Internal ID: BDB000997
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB000997/BDB000997.sdf
Basic Properties
Compound ID
E3L000997
Internal ID
BDB000997
Molecular formula
C20H28N4O
Molecular weight
340.471000
Exact mass
340.226312
XLogP
3.3480
TPSA
75.0100
HBA / HBD
3 / 2
Rotatable bonds
3
Heavy atoms / rings
25 / 4
Activity summary
Ki unknown 7.00000000 nM
1 activity record(s) imported
InChIKey
ROLMPYDFIXQMOD-UHFFFAOYSA-N
SMILES
CC1(c2nc3cccc(C(N)=O)c3[nH]2)CCCN(C2CCCC2)CC1
Aliases
BDBM27163 (preferred) 2-(1-cyclopentyl-4-methylazepan-4-yl)-1H-1,3-benzodiazole-4-carboxamide (source_name) BDBM27163 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM27163 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM27163 Open - 10.1021/jm801171j PMID: 19143569
PubChem CID11960926 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1(c2nc3cccc(C(N)=O)c3[nH]2)CCCN(C2CCCC2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB000997/BDB000997.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB000997/BDB000997.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB000997/BDB000997.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB000997/BDB000997.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB000997/BDB000997.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM27163 Ki 7 nM Very high DOI: 10.1021/jm801171j
PMID: 19143569 		1