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Isoindolinone scaffold, 48

E3L001389
Internal ID: BDB001389
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB001389/BDB001389.sdf
Basic Properties
Compound ID
E3L001389
Internal ID
BDB001389
Molecular formula
C25H25NO3
Molecular weight
387.479000
Exact mass
387.183444
XLogP
4.9789
TPSA
38.7700
HBA / HBD
3 / 0
Rotatable bonds
7
Heavy atoms / rings
29 / 4
Activity summary
IC50 unknown 413000.00000000 nM
1 activity record(s) imported
InChIKey
HNSYOOWGSDYYBO-UHFFFAOYSA-N
SMILES
CCCOC1(c2ccccc2)c2ccccc2C(=O)N1Cc1ccc(OC)cc1
Aliases
BDBM31257 (preferred) Isoindolinone scaffold, 48 (source_name) BDBM31257 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM31257 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM31257 Open - 10.1021/jm0601194 PMID: 17034127
PubChem CID16090449 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCOC1(c2ccccc2)c2ccccc2C(=O)N1Cc1ccc(OC)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB001389/BDB001389.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB001389/BDB001389.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB001389/BDB001389.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB001389/BDB001389.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB001389/BDB001389.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM31257 IC50 413000 nM Low DOI: 10.1021/jm0601194
PMID: 17034127 		1