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BDBM43383

E3L002176
Internal ID: BDB002176
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB002176/BDB002176.sdf
Basic Properties
Compound ID
E3L002176
Internal ID
BDB002176
Molecular formula
C20H20N2O3S
Molecular weight
368.458000
Exact mass
368.119463
XLogP
4.5191
TPSA
53.3500
HBA / HBD
5 / 0
Rotatable bonds
6
Heavy atoms / rings
26 / 3
Activity summary
EC50 unknown 240.00000000 nM
3 activity record(s) imported
InChIKey
NJKXCECKMAPPHS-BENRWUELSA-N
SMILES
CCSc1nc2ccccc2n1C(=O)/C=C\c1ccc(OC)c(OC)c1
Aliases
BDBM43383 (preferred) 1-[3-(3,4-dimethoxyphenyl)acryloyl]-2-(ethylsulfanyl)-1H-benzimidazole (source_name) BDBM43383 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM43383 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM43383 Open - 10.7270/Q21J984Z; 10.7270/Q2KW5DG0; 10.7270/Q2G73C3D
PubChem CID7285210 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCSc1nc2ccccc2n1C(=O)/C=C\c1ccc(OC)c(OC)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB002176/BDB002176.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB002176/BDB002176.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB002176/BDB002176.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB002176/BDB002176.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB002176/BDB002176.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM43383 EC50 240 nM Moderate DOI: 10.7270/Q21J984Z 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM43383 EC50 1633960 nM Low DOI: 10.7270/Q2KW5DG0 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM43383 EC50 410 nM Moderate DOI: 10.7270/Q2G73C3D 1