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US20250368640, Example 11

E3L003419
Internal ID: BDB003419
Activity data available Local docking-ready structure
Dock with O14965
Structure
/e3_file/ligand_db/generated/BDB003419/BDB003419.sdf
Basic Properties
Compound ID
E3L003419
Internal ID
BDB003419
Molecular formula
C39H40ClN7O4
Molecular weight
706.247000
Exact mass
705.283030
XLogP
6.0704
TPSA
121.9500
HBA / HBD
6 / 2
Rotatable bonds
7
Heavy atoms / rings
51 / 9
Activity summary
IC50 unknown 21.00000000 nM
1 activity record(s) imported
InChIKey
HLHPRHUZHWWUPG-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3ccc(N4CCC(CN5CCCN(c6cccc(-c7cnc8[nH]cc(C9CC9)c8c7Cl)c6)C5=O)CC4)cc3C2=O)C(=O)N1
Aliases
BDBM72263 (preferred) US20250368640, Example 11 (source_name) BDBM72263 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O14965 AURKA;AIK;AIRK1;ARK1;AURA;AYK1;BTAK;IAK1;STK15;STK6
Aurora kinase A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM72263 medium
; target=Aurora kinase A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM72263 Open - 10.7270/Q2891BPP
PubChem CID174301181 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3ccc(N4CCC(CN5CCCN(c6cccc(-c7cnc8[nH]cc(C9CC9)c8c7Cl)c6)C5=O)CC4)cc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003419/BDB003419.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003419/BDB003419.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003419/BDB003419.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003419/BDB003419.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003419/BDB003419.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Aurora kinase A
O14965
E3 ligase component 		BindingDB:BDBM72263 IC50 21 nM High DOI: 10.7270/Q2891BPP 1