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Benzo[e]pyrimido[5,4-b][1,4]diazepin-6(11H)-one, 9

E3L003765
Internal ID: BDB003765
Activity data available Local docking-ready structure
Dock with O14965
Structure
/e3_file/ligand_db/generated/BDB003765/BDB003765.sdf
Basic Properties
Compound ID
E3L003765
Internal ID
BDB003765
Molecular formula
C25H22N6O2
Molecular weight
438.491000
Exact mass
438.180424
XLogP
4.5521
TPSA
83.4800
HBA / HBD
7 / 1
Rotatable bonds
5
Heavy atoms / rings
33 / 5
Activity summary
IC50 unknown 18.00000000 nM
1 activity record(s) imported
InChIKey
HBAXHVRVIHMVIE-UHFFFAOYSA-N
SMILES
CN1C(=O)c2ccccc2N(C)c2nc(Nc3ccc(OCc4ccccn4)cc3)ncc21
Aliases
BDBM86604 (preferred) Benzo[e]pyrimido[5,4-b][1,4]diazepin-6(11H)-one, 9 (source_name) BDBM86604 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O14965 AURKA;AIK;AIRK1;ARK1;AURA;AYK1;BTAK;IAK1;STK15;STK6
Aurora kinase A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM86604 medium
; target=Aurora kinase A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM86604 Open - 10.1021/cb200305u PMID: 21992004
PubChem CID57340658 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1C(=O)c2ccccc2N(C)c2nc(Nc3ccc(OCc4ccccn4)cc3)ncc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003765/BDB003765.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003765/BDB003765.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003765/BDB003765.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003765/BDB003765.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003765/BDB003765.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Aurora kinase A
O14965
E3 ligase component 		BindingDB:BDBM86604 IC50 18 nM High DOI: 10.1021/cb200305u
PMID: 21992004 		1