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US20250388593, Example 2

E3L003799
Internal ID: BDB003799
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003799/BDB003799.sdf
Basic Properties
Compound ID
E3L003799
Internal ID
BDB003799
Molecular formula
C18H27N5O4
Molecular weight
377.445000
Exact mass
377.206304
XLogP
1.7604
TPSA
106.4200
HBA / HBD
6 / 1
Rotatable bonds
2
Heavy atoms / rings
27 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
SINYDHDOMXWBAQ-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)N1CCC(c2cn(C3CCCC(=O)NC3=O)nn2)CC1
Aliases
BDBM87352 (preferred) US20250388593, Example 2 (source_name) BDBM87352 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM87352 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM87352 Open - 10.7270/Q2TX3M56
PubChem CID177778569 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)N1CCC(c2cn(C3CCCC(=O)NC3=O)nn2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003799/BDB003799.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003799/BDB003799.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003799/BDB003799.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003799/BDB003799.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003799/BDB003799.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM87352 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1