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US20250388593, Example 9

E3L003805
Internal ID: BDB003805
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003805/BDB003805.sdf
Basic Properties
Compound ID
E3L003805
Internal ID
BDB003805
Molecular formula
C12H13ClN2O4S
Molecular weight
316.766000
Exact mass
316.028456
XLogP
0.8136
TPSA
92.3400
HBA / HBD
4 / 2
Rotatable bonds
3
Heavy atoms / rings
20 / 2
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
ZOKQAEBEMBRNON-UHFFFAOYSA-N
SMILES
O=C1CCCC(NS(=O)(=O)c2cccc(Cl)c2)C(=O)N1
Aliases
BDBM87358 (preferred) US20250388593, Example 9 (source_name) BDBM87358 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM87358 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM87358 Open - 10.7270/Q2TX3M56
PubChem CID171844126 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCCC(NS(=O)(=O)c2cccc(Cl)c2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003805/BDB003805.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003805/BDB003805.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003805/BDB003805.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003805/BDB003805.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003805/BDB003805.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM87358 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1