< Back to small molecule database

US20250388593, Example 24

E3L003819
Internal ID: BDB003819
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003819/BDB003819.sdf
Basic Properties
Compound ID
E3L003819
Internal ID
BDB003819
Molecular formula
C18H23FN2O4
Molecular weight
350.390000
Exact mass
350.164185
XLogP
3.0101
TPSA
75.7100
HBA / HBD
4 / 1
Rotatable bonds
3
Heavy atoms / rings
25 / 2
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
OOJFEDUEFZNJJK-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)N(CC1CCCC(=O)NC1=O)c1ccc(F)cc1
Aliases
BDBM87827 (preferred) US20250388593, Example 24 (source_name) BDBM87827 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM87827 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM87827 Open - 10.7270/Q2TX3M56
PubChem CID171843970 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)N(CC1CCCC(=O)NC1=O)c1ccc(F)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003819/BDB003819.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003819/BDB003819.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003819/BDB003819.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003819/BDB003819.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003819/BDB003819.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM87827 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1