< Back to small molecule database

US20250388593, Example 36

E3L003832
Internal ID: BDB003832
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003832/BDB003832.sdf
Basic Properties
Compound ID
E3L003832
Internal ID
BDB003832
Molecular formula
C18H21N5O4
Molecular weight
371.397000
Exact mass
371.159354
XLogP
0.7781
TPSA
106.4200
HBA / HBD
7 / 1
Rotatable bonds
2
Heavy atoms / rings
27 / 4
Activity summary
Kd < 50000.00000000 nM
1 activity record(s) imported
InChIKey
NMPJJRMGUQDRAK-UHFFFAOYSA-N
SMILES
COC(=O)c1cc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc2n1C
Aliases
BDBM88431 (preferred) US20250388593, Example 36 (source_name) BDBM88431 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88431 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88431 Open - 10.7270/Q2TX3M56
PubChem CID177778611 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC(=O)c1cc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc2n1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003832/BDB003832.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003832/BDB003832.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003832/BDB003832.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003832/BDB003832.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003832/BDB003832.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88431 Kd <50000 nM Uncertain DOI: 10.7270/Q2TX3M56 1