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US20250388593, Example 38

E3L003834
Internal ID: BDB003834
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003834/BDB003834.sdf
Basic Properties
Compound ID
E3L003834
Internal ID
BDB003834
Molecular formula
C15H16F3N3O2
Molecular weight
327.306000
Exact mass
327.119461
XLogP
2.1236
TPSA
62.3000
HBA / HBD
4 / 1
Rotatable bonds
1
Heavy atoms / rings
23 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
YPRSNYPXPJFGFN-UHFFFAOYSA-N
SMILES
O=C1CCCC2(CCN(c3ccc(C(F)(F)F)cn3)C2)C(=O)N1
Aliases
BDBM88433 (preferred) US20250388593, Example 38 (source_name) BDBM88433 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM88433 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88433 Open - 10.7270/Q2TX3M56
PubChem CID177778542 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCCC2(CCN(c3ccc(C(F)(F)F)cn3)C2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003834/BDB003834.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003834/BDB003834.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003834/BDB003834.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003834/BDB003834.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003834/BDB003834.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM88433 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1