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US20250388593, Example 54

E3L003850
Internal ID: BDB003850
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003850/BDB003850.sdf
Basic Properties
Compound ID
E3L003850
Internal ID
BDB003850
Molecular formula
C20H21N3O6
Molecular weight
399.403000
Exact mass
399.143035
XLogP
-0.1607
TPSA
113.0900
HBA / HBD
7 / 1
Rotatable bonds
4
Heavy atoms / rings
29 / 4
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
JKKSSIXFCXQERZ-UHFFFAOYSA-N
SMILES
COC(=O)c1ccc(CN2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)cc1
Aliases
BDBM88449 (preferred) US20250388593, Example 54 (source_name) BDBM88449 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88449 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88449 Open - 10.7270/Q2TX3M56
PubChem CID177778560 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC(=O)c1ccc(CN2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003850/BDB003850.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003850/BDB003850.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003850/BDB003850.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003850/BDB003850.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003850/BDB003850.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88449 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1