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US20250388593, Example 55

E3L003851
Internal ID: BDB003851
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003851/BDB003851.sdf
Basic Properties
Compound ID
E3L003851
Internal ID
BDB003851
Molecular formula
C20H20N4O6
Molecular weight
412.402000
Exact mass
412.138284
XLogP
-1.1909
TPSA
132.9600
HBA / HBD
6 / 2
Rotatable bonds
4
Heavy atoms / rings
30 / 4
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
VWYDPAXUGXKNIS-UHFFFAOYSA-N
SMILES
O=C1CCC(N2C(=O)CC3(CN(C(=O)CNC(=O)c4ccccc4)C3)C2=O)C(=O)N1
Aliases
BDBM88450 (preferred) US20250388593, Example 55 (source_name) BDBM88450 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88450 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88450 Open - 10.7270/Q2TX3M56
PubChem CID171843951 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2C(=O)CC3(CN(C(=O)CNC(=O)c4ccccc4)C3)C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003851/BDB003851.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003851/BDB003851.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003851/BDB003851.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003851/BDB003851.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003851/BDB003851.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88450 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1