< Back to small molecule database

US20250388593, Example 52

E3L003854
Internal ID: BDB003854
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003854/BDB003854.sdf
Basic Properties
Compound ID
E3L003854
Internal ID
BDB003854
Molecular formula
C21H20N4O6S
Molecular weight
456.480000
Exact mass
456.110355
XLogP
0.8435
TPSA
125.9800
HBA / HBD
9 / 1
Rotatable bonds
4
Heavy atoms / rings
32 / 5
Activity summary
Kd < 50000.00000000 nM
1 activity record(s) imported
InChIKey
KZZMPTKFLPFXHY-UHFFFAOYSA-N
SMILES
CCOC(=O)c1ccc2nc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)sc2c1
Aliases
BDBM88455 (preferred) US20250388593, Example 52 (source_name) BDBM88455 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88455 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88455 Open - 10.7270/Q2TX3M56
PubChem CID177778483 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCOC(=O)c1ccc2nc(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)sc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003854/BDB003854.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003854/BDB003854.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003854/BDB003854.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003854/BDB003854.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003854/BDB003854.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88455 Kd <50000 nM Uncertain DOI: 10.7270/Q2TX3M56 1