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US20250388593, Example 67

E3L003862
Internal ID: BDB003862
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003862/BDB003862.sdf
Basic Properties
Compound ID
E3L003862
Internal ID
BDB003862
Molecular formula
C19H23FN2O6
Molecular weight
394.399000
Exact mass
394.154015
XLogP
1.4713
TPSA
110.8000
HBA / HBD
6 / 2
Rotatable bonds
5
Heavy atoms / rings
28 / 2
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
QFZGPABYHSLHGB-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)COc1cccc(C(=O)NC2CCCC(=O)NC2=O)c1F
Aliases
BDBM88464 (preferred) US20250388593, Example 67 (source_name) BDBM88464 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88464 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88464 Open - 10.7270/Q2TX3M56
PubChem CID171843869 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)COc1cccc(C(=O)NC2CCCC(=O)NC2=O)c1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003862/BDB003862.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003862/BDB003862.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003862/BDB003862.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003862/BDB003862.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003862/BDB003862.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88464 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1