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US20250388593, Example 68

E3L003863
Internal ID: BDB003863
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003863/BDB003863.sdf
Basic Properties
Compound ID
E3L003863
Internal ID
BDB003863
Molecular formula
C20H26N2O7
Molecular weight
406.435000
Exact mass
406.174001
XLogP
1.3408
TPSA
120.0300
HBA / HBD
7 / 2
Rotatable bonds
6
Heavy atoms / rings
29 / 2
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
GOYBFZHAXQQDGF-UHFFFAOYSA-N
SMILES
COc1c(OCC(=O)OC(C)(C)C)cccc1C(=O)NC1CCCC(=O)NC1=O
Aliases
BDBM88465 (preferred) US20250388593, Example 68 (source_name) BDBM88465 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88465 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88465 Open - 10.7270/Q2TX3M56
PubChem CID176081791 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1c(OCC(=O)OC(C)(C)C)cccc1C(=O)NC1CCCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003863/BDB003863.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003863/BDB003863.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003863/BDB003863.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003863/BDB003863.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003863/BDB003863.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88465 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1