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US20250388593, Example 69

E3L003864
Internal ID: BDB003864
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003864/BDB003864.sdf
Basic Properties
Compound ID
E3L003864
Internal ID
BDB003864
Molecular formula
C18H23N3O6
Molecular weight
377.397000
Exact mass
377.158685
XLogP
0.7272
TPSA
123.6900
HBA / HBD
7 / 2
Rotatable bonds
5
Heavy atoms / rings
27 / 2
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
VMCMHALPTLYJBD-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)COc1cccc(C(=O)NC2CCCC(=O)NC2=O)n1
Aliases
BDBM88466 (preferred) US20250388593, Example 69 (source_name) BDBM88466 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88466 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88466 Open - 10.7270/Q2TX3M56
PubChem CID176081789 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)COc1cccc(C(=O)NC2CCCC(=O)NC2=O)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003864/BDB003864.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003864/BDB003864.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003864/BDB003864.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003864/BDB003864.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003864/BDB003864.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88466 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1