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US20250388593, Example 79

E3L003874
Internal ID: BDB003874
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003874/BDB003874.sdf
Basic Properties
Compound ID
E3L003874
Internal ID
BDB003874
Molecular formula
C15H15F3N4O4
Molecular weight
372.303000
Exact mass
372.104540
XLogP
2.0318
TPSA
105.4400
HBA / HBD
6 / 1
Rotatable bonds
2
Heavy atoms / rings
26 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
DHSFIKMIFCBMLC-UHFFFAOYSA-N
SMILES
O=C1CCCC2(CCN(c3ncc([N+](=O)[O-])cc3C(F)(F)F)C2)C(=O)N1
Aliases
BDBM88477 (preferred) US20250388593, Example 79 (source_name) BDBM88477 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88477 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88477 Open - 10.7270/Q2TX3M56
PubChem CID177778522 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCCC2(CCN(c3ncc([N+](=O)[O-])cc3C(F)(F)F)C2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003874/BDB003874.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003874/BDB003874.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003874/BDB003874.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003874/BDB003874.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003874/BDB003874.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88477 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1