< Back to small molecule database

US20250388593, Example 81

E3L003876
Internal ID: BDB003876
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003876/BDB003876.sdf
Basic Properties
Compound ID
E3L003876
Internal ID
BDB003876
Molecular formula
C16H19N3O4
Molecular weight
317.345000
Exact mass
317.137556
XLogP
1.9264
TPSA
92.5500
HBA / HBD
5 / 1
Rotatable bonds
2
Heavy atoms / rings
23 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
NPDWLIIFQQTYKO-UHFFFAOYSA-N
SMILES
Cc1cc(N2CCC3(CCCC(=O)NC3=O)C2)ccc1[N+](=O)[O-]
Aliases
BDBM88480 (preferred) US20250388593, Example 81 (source_name) BDBM88480 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88480 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88480 Open - 10.7270/Q2TX3M56
PubChem CID177778616 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(N2CCC3(CCCC(=O)NC3=O)C2)ccc1[N+](=O)[O-] keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003876/BDB003876.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003876/BDB003876.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003876/BDB003876.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003876/BDB003876.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003876/BDB003876.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88480 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1