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US20250388593, Example 118

E3L003907
Internal ID: BDB003907
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003907/BDB003907.sdf
Basic Properties
Compound ID
E3L003907
Internal ID
BDB003907
Molecular formula
C12H12N4O2S
Molecular weight
276.321000
Exact mass
276.068097
XLogP
1.7149
TPSA
88.3200
HBA / HBD
5 / 2
Rotatable bonds
1
Heavy atoms / rings
19 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
OMNOIWMWSSZLRQ-UHFFFAOYSA-N
SMILES
Nc1ccc2nc(N3CCCC(=O)NC3=O)sc2c1
Aliases
BDBM88522 (preferred) US20250388593, Example 118 (source_name) BDBM88522 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88522 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88522 Open - 10.7270/Q2TX3M56
PubChem CID171844025 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ccc2nc(N3CCCC(=O)NC3=O)sc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003907/BDB003907.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003907/BDB003907.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003907/BDB003907.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003907/BDB003907.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003907/BDB003907.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88522 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1