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US20250388593, Example 156

E3L003939
Internal ID: BDB003939
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003939/BDB003939.sdf
Basic Properties
Compound ID
E3L003939
Internal ID
BDB003939
Molecular formula
C25H27ClN4O4
Molecular weight
482.968000
Exact mass
482.172083
XLogP
3.6291
TPSA
107.6100
HBA / HBD
4 / 3
Rotatable bonds
4
Heavy atoms / rings
34 / 4
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
XYYGMEWJRDEWQX-UHFFFAOYSA-N
SMILES
Cc1ccc(NC(=O)NCc2ccccc2C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1Cl
Aliases
BDBM88597 (preferred) US20250388593, Example 156 (source_name) BDBM88597 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88597 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88597 Open - 10.7270/Q2TX3M56
PubChem CID177778606 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(NC(=O)NCc2ccccc2C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003939/BDB003939.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003939/BDB003939.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003939/BDB003939.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003939/BDB003939.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003939/BDB003939.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88597 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1