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US20250388593, Example 157

E3L003940
Internal ID: BDB003940
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003940/BDB003940.sdf
Basic Properties
Compound ID
E3L003940
Internal ID
BDB003940
Molecular formula
C25H27ClN4O4
Molecular weight
482.968000
Exact mass
482.172083
XLogP
3.6291
TPSA
107.6100
HBA / HBD
4 / 3
Rotatable bonds
4
Heavy atoms / rings
34 / 4
Activity summary
Kd < 50000.00000000 nM
1 activity record(s) imported
InChIKey
SQZKJBKMSVVLRL-UHFFFAOYSA-N
SMILES
Cc1ccc(NC(=O)NCc2ccc(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cc2)cc1Cl
Aliases
BDBM88598 (preferred) US20250388593, Example 157 (source_name) BDBM88598 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88598 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88598 Open - 10.7270/Q2TX3M56
PubChem CID177778485 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(NC(=O)NCc2ccc(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cc2)cc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003940/BDB003940.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003940/BDB003940.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003940/BDB003940.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003940/BDB003940.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003940/BDB003940.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88598 Kd <50000 nM Uncertain DOI: 10.7270/Q2TX3M56 1