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US20250388593, Example 160

E3L003943
Internal ID: BDB003943
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003943/BDB003943.sdf
Basic Properties
Compound ID
E3L003943
Internal ID
BDB003943
Molecular formula
C27H38ClN3O5
Molecular weight
520.070000
Exact mass
519.249999
XLogP
4.6266
TPSA
104.8100
HBA / HBD
5 / 2
Rotatable bonds
8
Heavy atoms / rings
36 / 3
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
LUYCXUJLIJBSTP-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)NCCCCCCc1ccc(C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1Cl
Aliases
BDBM88601 (preferred) US20250388593, Example 160 (source_name) BDBM88601 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88601 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88601 Open - 10.7270/Q2TX3M56
PubChem CID177778516 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)NCCCCCCc1ccc(C(=O)N2CCC3(CCCC(=O)NC3=O)C2)cc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003943/BDB003943.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003943/BDB003943.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003943/BDB003943.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003943/BDB003943.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003943/BDB003943.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88601 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1