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US20250388593, Example 161

E3L003944
Internal ID: BDB003944
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003944/BDB003944.sdf
Basic Properties
Compound ID
E3L003944
Internal ID
BDB003944
Molecular formula
C31H41N3O5
Molecular weight
535.685000
Exact mass
535.304621
XLogP
5.1264
TPSA
104.8100
HBA / HBD
5 / 2
Rotatable bonds
8
Heavy atoms / rings
39 / 4
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
LVAHAYMTMJYTSS-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)NCCCCCCc1cccc2c(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cccc12
Aliases
BDBM88602 (preferred) US20250388593, Example 161 (source_name) BDBM88602 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88602 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88602 Open - 10.7270/Q2TX3M56
PubChem CID177778574 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)NCCCCCCc1cccc2c(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003944/BDB003944.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003944/BDB003944.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003944/BDB003944.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003944/BDB003944.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003944/BDB003944.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88602 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1