< Back to small molecule database

US20250388593, Example 162

E3L003945
Internal ID: BDB003945
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003945/BDB003945.sdf
Basic Properties
Compound ID
E3L003945
Internal ID
BDB003945
Molecular formula
C29H40N4O5
Molecular weight
524.662000
Exact mass
524.299870
XLogP
4.3854
TPSA
109.7400
HBA / HBD
5 / 2
Rotatable bonds
8
Heavy atoms / rings
38 / 4
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
IZBCKSNPQCCAJK-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)NCCCCCCn1ccc2c(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cccc21
Aliases
BDBM88603 (preferred) US20250388593, Example 162 (source_name) BDBM88603 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88603 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88603 Open - 10.7270/Q2TX3M56
PubChem CID171843921 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)NCCCCCCn1ccc2c(C(=O)N3CCC4(CCCC(=O)NC4=O)C3)cccc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003945/BDB003945.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003945/BDB003945.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003945/BDB003945.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003945/BDB003945.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003945/BDB003945.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88603 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1