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US20250388593, Example 179

E3L003953
Internal ID: BDB003953
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003953/BDB003953.sdf
Basic Properties
Compound ID
E3L003953
Internal ID
BDB003953
Molecular formula
C16H17N3O2
Molecular weight
283.331000
Exact mass
283.132077
XLogP
1.5815
TPSA
73.2000
HBA / HBD
4 / 1
Rotatable bonds
1
Heavy atoms / rings
21 / 3
Activity summary
Kd < 50000.00000000 nM
1 activity record(s) imported
InChIKey
PPHNMMGDLHXZJQ-UHFFFAOYSA-N
SMILES
N#Cc1ccc(N2CCC3(CCCC(=O)NC3=O)C2)cc1
Aliases
BDBM88612 (preferred) US20250388593, Example 179 (source_name) BDBM88612 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88612 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88612 Open - 10.7270/Q2TX3M56
PubChem CID177778552 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1ccc(N2CCC3(CCCC(=O)NC3=O)C2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003953/BDB003953.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003953/BDB003953.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003953/BDB003953.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003953/BDB003953.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003953/BDB003953.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88612 Kd <50000 nM Uncertain DOI: 10.7270/Q2TX3M56 1