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US20250388593, Example 180

E3L003954
Internal ID: BDB003954
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003954/BDB003954.sdf
Basic Properties
Compound ID
E3L003954
Internal ID
BDB003954
Molecular formula
C21H27N5O4
Molecular weight
413.478000
Exact mass
413.206304
XLogP
1.9468
TPSA
106.4200
HBA / HBD
7 / 1
Rotatable bonds
2
Heavy atoms / rings
30 / 4
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
XUSSIZNHKCULNN-UHFFFAOYSA-N
SMILES
Cn1c(C(=O)OC(C)(C)C)cc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc21
Aliases
BDBM88613 (preferred) US20250388593, Example 180 (source_name) BDBM88613 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88613 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88613 Open - 10.7270/Q2TX3M56
PubChem CID177778544 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(C(=O)OC(C)(C)C)cc2c(N3CCC4(CCCC(=O)NC4=O)C3)ncnc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003954/BDB003954.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003954/BDB003954.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003954/BDB003954.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003954/BDB003954.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003954/BDB003954.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88613 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1