< Back to small molecule database

US20250388593, Example 185

E3L003958
Internal ID: BDB003958
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003958/BDB003958.sdf
Basic Properties
Compound ID
E3L003958
Internal ID
BDB003958
Molecular formula
C21H32N6O4
Molecular weight
432.525000
Exact mass
432.248504
XLogP
1.8265
TPSA
125.5500
HBA / HBD
8 / 3
Rotatable bonds
6
Heavy atoms / rings
31 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
YCMJXHPLOBXXNW-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)NCCCNc1nccc(N2CCC3(CCCC(=O)NC3=O)C2)n1
Aliases
BDBM88617 (preferred) US20250388593, Example 185 (source_name) BDBM88617 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88617 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88617 Open - 10.7270/Q2TX3M56
PubChem CID178289689 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)NCCCNc1nccc(N2CCC3(CCCC(=O)NC3=O)C2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003958/BDB003958.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003958/BDB003958.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003958/BDB003958.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003958/BDB003958.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003958/BDB003958.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88617 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1