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US20250388593, Example 202

E3L003974
Internal ID: BDB003974
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003974/BDB003974.sdf
Basic Properties
Compound ID
E3L003974
Internal ID
BDB003974
Molecular formula
C24H26ClN5O4
Molecular weight
483.956000
Exact mass
483.167332
XLogP
3.3444
TPSA
114.2300
HBA / HBD
4 / 3
Rotatable bonds
6
Heavy atoms / rings
34 / 4
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
ZHMREHCWAHCJMK-UHFFFAOYSA-N
SMILES
Cc1ccc(NC(=O)NCCCn2c(=O)n(C3CCCC(=O)NC3=O)c3ccccc32)cc1Cl
Aliases
BDBM88633 (preferred) US20250388593, Example 202 (source_name) BDBM88633 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88633 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88633 Open - 10.7270/Q2TX3M56
PubChem CID171843932 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(NC(=O)NCCCn2c(=O)n(C3CCCC(=O)NC3=O)c3ccccc32)cc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003974/BDB003974.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003974/BDB003974.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003974/BDB003974.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003974/BDB003974.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003974/BDB003974.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88633 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1