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US20250388593, Example 209

E3L003978
Internal ID: BDB003978
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003978/BDB003978.sdf
Basic Properties
Compound ID
E3L003978
Internal ID
BDB003978
Molecular formula
C21H27N3O4
Molecular weight
385.464000
Exact mass
385.200156
XLogP
3.3718
TPSA
101.2900
HBA / HBD
4 / 2
Rotatable bonds
9
Heavy atoms / rings
28 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
WELWTLFSJDLNKE-UHFFFAOYSA-N
SMILES
O=C(O)CCCCCCCc1nn(C2CCCC(=O)NC2=O)c2ccccc12
Aliases
BDBM88637 (preferred) US20250388593, Example 209 (source_name) BDBM88637 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88637 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88637 Open - 10.7270/Q2TX3M56
PubChem CID175638709 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)CCCCCCCc1nn(C2CCCC(=O)NC2=O)c2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003978/BDB003978.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003978/BDB003978.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003978/BDB003978.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003978/BDB003978.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003978/BDB003978.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88637 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1