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US20250388593, Example 220

E3L003988
Internal ID: BDB003988
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB003988/BDB003988.sdf
Basic Properties
Compound ID
E3L003988
Internal ID
BDB003988
Molecular formula
C24H30N4O5
Molecular weight
454.527000
Exact mass
454.221620
XLogP
2.7320
TPSA
102.6400
HBA / HBD
5 / 1
Rotatable bonds
2
Heavy atoms / rings
33 / 4
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
BSYPHYPDQCQAGM-UHFFFAOYSA-N
SMILES
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(C3=CCN(C(=O)OC(C)(C)C)CC3)c21
Aliases
BDBM88682 (preferred) US20250388593, Example 220 (source_name) BDBM88682 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM88682 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM88682 Open - 10.7270/Q2TX3M56
PubChem CID171844116 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(C3=CCN(C(=O)OC(C)(C)C)CC3)c21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB003988/BDB003988.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB003988/BDB003988.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB003988/BDB003988.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB003988/BDB003988.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB003988/BDB003988.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM88682 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1