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US20250388593, Example 222

E3L004076
Internal ID: BDB004076
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004076/BDB004076.sdf
Basic Properties
Compound ID
E3L004076
Internal ID
BDB004076
Molecular formula
C25H32N4O5
Molecular weight
468.554000
Exact mass
468.237270
XLogP
2.1386
TPSA
102.6400
HBA / HBD
6 / 1
Rotatable bonds
4
Heavy atoms / rings
34 / 4
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
SHHRXPFFPZUKDJ-UHFFFAOYSA-N
SMILES
Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(C3=CCN(CC(=O)OC(C)(C)C)CC3)c21
Aliases
BDBM95469 (preferred) US20250388593, Example 222 (source_name) BDBM95469 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95469 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95469 Open - 10.7270/Q2TX3M56
PubChem CID171844010 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(=O)n(C2CCCC(=O)NC2=O)c2cccc(C3=CCN(CC(=O)OC(C)(C)C)CC3)c21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004076/BDB004076.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004076/BDB004076.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004076/BDB004076.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004076/BDB004076.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004076/BDB004076.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95469 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1