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US20250388593, Example 225

E3L004079
Internal ID: BDB004079
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004079/BDB004079.sdf
Basic Properties
Compound ID
E3L004079
Internal ID
BDB004079
Molecular formula
C16H17N3O5
Molecular weight
331.328000
Exact mass
331.116821
XLogP
1.5347
TPSA
109.6200
HBA / HBD
5 / 1
Rotatable bonds
2
Heavy atoms / rings
24 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
QIRXHAXMJXHBLM-UHFFFAOYSA-N
SMILES
O=C1CCCC2(CCN(c3ccc([N+](=O)[O-])cc3)C(=O)C2)C(=O)N1
Aliases
BDBM95473 (preferred) US20250388593, Example 225 (source_name) BDBM95473 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95473 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95473 Open - 10.7270/Q2TX3M56
PubChem CID171843913 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCCC2(CCN(c3ccc([N+](=O)[O-])cc3)C(=O)C2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004079/BDB004079.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004079/BDB004079.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004079/BDB004079.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004079/BDB004079.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004079/BDB004079.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95473 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1