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US20250388593, Example 232

E3L004084
Internal ID: BDB004084
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004084/BDB004084.sdf
Basic Properties
Compound ID
E3L004084
Internal ID
BDB004084
Molecular formula
C17H16N4O6
Molecular weight
372.337000
Exact mass
372.106984
XLogP
-0.0347
TPSA
129.9300
HBA / HBD
7 / 1
Rotatable bonds
3
Heavy atoms / rings
27 / 4
Activity summary
Kd unknown 75000.00000000 nM
1 activity record(s) imported
InChIKey
QQLKWJNBHKJMCZ-UHFFFAOYSA-N
SMILES
O=C1CCC(N2C(=O)CC3(CN(c4ccc([N+](=O)[O-])cc4)C3)C2=O)C(=O)N1
Aliases
BDBM95478 (preferred) US20250388593, Example 232 (source_name) BDBM95478 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95478 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95478 Open - 10.7270/Q2TX3M56
PubChem CID177778567 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2C(=O)CC3(CN(c4ccc([N+](=O)[O-])cc4)C3)C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004084/BDB004084.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004084/BDB004084.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004084/BDB004084.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004084/BDB004084.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004084/BDB004084.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95478 Kd 75000 nM Low DOI: 10.7270/Q2TX3M56 1