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US20250388593, Example 234

E3L004086
Internal ID: BDB004086
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004086/BDB004086.sdf
Basic Properties
Compound ID
E3L004086
Internal ID
BDB004086
Molecular formula
C23H30N6O7
Molecular weight
502.528000
Exact mass
502.217597
XLogP
-0.3827
TPSA
160.1300
HBA / HBD
11 / 2
Rotatable bonds
8
Heavy atoms / rings
36 / 4
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
KTDIYZDVHPRURD-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)COCCNc1nccc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)n1
Aliases
BDBM95480 (preferred) US20250388593, Example 234 (source_name) BDBM95480 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95480 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95480 Open - 10.7270/Q2TX3M56
PubChem CID178289698 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)COCCNc1nccc(N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004086/BDB004086.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004086/BDB004086.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004086/BDB004086.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004086/BDB004086.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004086/BDB004086.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95480 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1