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US20250388593, Example 235

E3L004087
Internal ID: BDB004087
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004087/BDB004087.sdf
Basic Properties
Compound ID
E3L004087
Internal ID
BDB004087
Molecular formula
C18H18N6O4
Molecular weight
382.380000
Exact mass
382.138953
XLogP
-0.6612
TPSA
117.5000
HBA / HBD
7 / 1
Rotatable bonds
2
Heavy atoms / rings
28 / 5
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
BUKOBNSXQCUWHI-UHFFFAOYSA-N
SMILES
Cn1ccc2c(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)ncnc21
Aliases
BDBM95481 (preferred) US20250388593, Example 235 (source_name) BDBM95481 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95481 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95481 Open - 10.7270/Q2TX3M56
PubChem CID175638930 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1ccc2c(N3CC4(CC(=O)N(C5CCC(=O)NC5=O)C4=O)C3)ncnc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004087/BDB004087.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004087/BDB004087.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004087/BDB004087.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004087/BDB004087.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004087/BDB004087.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95481 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1