< Back to small molecule database

US20250388593, Example 242

E3L004094
Internal ID: BDB004094
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004094/BDB004094.sdf
Basic Properties
Compound ID
E3L004094
Internal ID
BDB004094
Molecular formula
C23H28N6O6
Molecular weight
484.513000
Exact mass
484.207033
XLogP
0.1403
TPSA
142.1100
HBA / HBD
9 / 1
Rotatable bonds
2
Heavy atoms / rings
35 / 5
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
SUYXZCICQNEHMU-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)N1CCc2c(ncnc2N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)C1
Aliases
BDBM95488 (preferred) US20250388593, Example 242 (source_name) BDBM95488 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95488 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95488 Open - 10.7270/Q2TX3M56
PubChem CID177778482 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)N1CCc2c(ncnc2N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004094/BDB004094.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004094/BDB004094.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004094/BDB004094.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004094/BDB004094.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004094/BDB004094.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95488 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1