< Back to small molecule database

US20250388593, Example 254

E3L004104
Internal ID: BDB004104
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004104/BDB004104.sdf
Basic Properties
Compound ID
E3L004104
Internal ID
BDB004104
Molecular formula
C13H14N4O3
Molecular weight
274.280000
Exact mass
274.106590
XLogP
0.8077
TPSA
86.1100
HBA / HBD
5 / 1
Rotatable bonds
2
Heavy atoms / rings
20 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
CPLQSRRRDBTXNP-UHFFFAOYSA-N
SMILES
COc1ccc2nnn(C3CCCC(=O)NC3=O)c2c1
Aliases
BDBM95498 (preferred) US20250388593, Example 254 (source_name) BDBM95498 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95498 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95498 Open - 10.7270/Q2TX3M56
PubChem CID175638937 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc2nnn(C3CCCC(=O)NC3=O)c2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004104/BDB004104.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004104/BDB004104.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004104/BDB004104.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004104/BDB004104.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004104/BDB004104.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95498 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1