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US20250388593, Example 258

E3L004108
Internal ID: BDB004108
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004108/BDB004108.sdf
Basic Properties
Compound ID
E3L004108
Internal ID
BDB004108
Molecular formula
C16H16N2O4
Molecular weight
300.314000
Exact mass
300.111007
XLogP
1.3779
TPSA
77.4000
HBA / HBD
4 / 1
Rotatable bonds
2
Heavy atoms / rings
22 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
KPTRPGNUEPFWLJ-UHFFFAOYSA-N
SMILES
COc1cccc2c1ccc(=O)n2C1CCCC(=O)NC1=O
Aliases
BDBM95502 (preferred) US20250388593, Example 258 (source_name) BDBM95502 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95502 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95502 Open - 10.7270/Q2TX3M56
PubChem CID175638842 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cccc2c1ccc(=O)n2C1CCCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004108/BDB004108.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004108/BDB004108.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004108/BDB004108.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004108/BDB004108.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004108/BDB004108.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95502 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1