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US20250388593, Example 259

E3L004109
Internal ID: BDB004109
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004109/BDB004109.sdf
Basic Properties
Compound ID
E3L004109
Internal ID
BDB004109
Molecular formula
C15H15N3O4
Molecular weight
301.302000
Exact mass
301.106256
XLogP
0.0680
TPSA
90.1700
HBA / HBD
4 / 1
Rotatable bonds
1
Heavy atoms / rings
22 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
LNCHQFMAEKDRMG-UHFFFAOYSA-N
SMILES
Cn1c(=O)c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
Aliases
BDBM95503 (preferred) US20250388593, Example 259 (source_name) BDBM95503 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM95503 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95503 Open - 10.7270/Q2TX3M56
PubChem CID175638843 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(=O)c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004109/BDB004109.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004109/BDB004109.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004109/BDB004109.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004109/BDB004109.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004109/BDB004109.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM95503 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1