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US20250388593, Example 272

E3L004120
Internal ID: BDB004120
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004120/BDB004120.sdf
Basic Properties
Compound ID
E3L004120
Internal ID
BDB004120
Molecular formula
C15H21N5O3
Molecular weight
319.365000
Exact mass
319.164440
XLogP
-0.6371
TPSA
87.5400
HBA / HBD
6 / 1
Rotatable bonds
2
Heavy atoms / rings
23 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
PZKLKQUUJNQSKV-UHFFFAOYSA-N
SMILES
CN1CCN(c2cnn(C3CCCC(=O)NC3=O)c(=O)c2)CC1
Aliases
BDBM95514 (preferred) US20250388593, Example 272 (source_name) BDBM95514 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95514 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95514 Open - 10.7270/Q2TX3M56
PubChem CID171844147 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CCN(c2cnn(C3CCCC(=O)NC3=O)c(=O)c2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004120/BDB004120.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004120/BDB004120.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004120/BDB004120.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004120/BDB004120.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004120/BDB004120.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95514 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1