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US20250388593, Example 275

E3L004123
Internal ID: BDB004123
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004123/BDB004123.sdf
Basic Properties
Compound ID
E3L004123
Internal ID
BDB004123
Molecular formula
C20H23N3O6
Molecular weight
401.419000
Exact mass
401.158685
XLogP
0.8727
TPSA
116.4700
HBA / HBD
6 / 1
Rotatable bonds
3
Heavy atoms / rings
29 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
YFGDGXOKMXCCGS-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)Cn1c(=O)c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21
Aliases
BDBM95517 (preferred) US20250388593, Example 275 (source_name) BDBM95517 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM95517 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95517 Open - 10.7270/Q2TX3M56
PubChem CID171844021 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)Cn1c(=O)c(=O)n(C2CCCC(=O)NC2=O)c2ccccc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004123/BDB004123.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004123/BDB004123.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004123/BDB004123.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004123/BDB004123.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004123/BDB004123.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM95517 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1