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US20250388593, Example 277

E3L004125
Internal ID: BDB004125
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004125/BDB004125.sdf
Basic Properties
Compound ID
E3L004125
Internal ID
BDB004125
Molecular formula
C25H30N4O6
Molecular weight
482.537000
Exact mass
482.216535
XLogP
0.0603
TPSA
116.3300
HBA / HBD
8 / 1
Rotatable bonds
6
Heavy atoms / rings
35 / 5
Activity summary
Kd < 50000.00000000 nM
1 activity record(s) imported
InChIKey
CDXJJHQFUNITCJ-UHFFFAOYSA-N
SMILES
O=C1CCC(N2C(=O)CC3(CN(C4CCN(CC(=O)OCc5ccccc5)CC4)C3)C2=O)C(=O)N1
Aliases
BDBM95519 (preferred) US20250388593, Example 277 (source_name) BDBM95519 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95519 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95519 Open - 10.7270/Q2TX3M56
PubChem CID171844055 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2C(=O)CC3(CN(C4CCN(CC(=O)OCc5ccccc5)CC4)C3)C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004125/BDB004125.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004125/BDB004125.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004125/BDB004125.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004125/BDB004125.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004125/BDB004125.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95519 Kd <50000 nM Uncertain DOI: 10.7270/Q2TX3M56 1