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US20250388593, Example 278

E3L004126
Internal ID: BDB004126
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB004126/BDB004126.sdf
Basic Properties
Compound ID
E3L004126
Internal ID
BDB004126
Molecular formula
C24H30N4O8S
Molecular weight
534.591000
Exact mass
534.178435
XLogP
0.3086
TPSA
159.2600
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
37 / 4
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
RZPYXTZWZXDZKT-UHFFFAOYSA-N
SMILES
CC(C)(C)OC(=O)NCCc1ccc(S(=O)(=O)N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)cc1
Aliases
BDBM95520 (preferred) US20250388593, Example 278 (source_name) BDBM95520 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM95520 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM95520 Open - 10.7270/Q2TX3M56
PubChem CID171843902 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)OC(=O)NCCc1ccc(S(=O)(=O)N2CC3(CC(=O)N(C4CCC(=O)NC4=O)C3=O)C2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB004126/BDB004126.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB004126/BDB004126.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB004126/BDB004126.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB004126/BDB004126.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB004126/BDB004126.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM95520 Kd >100000 nM Low DOI: 10.7270/Q2TX3M56 1